James Checco

@jameswchecco.bsky.social

Assistant Professor of Chemistry, Univeristy of Nebraska-Lincoln. Chemical Biologist. Cell-cell signaling peptides. Views my own.

Looking forward to speaking at this seminar series on Friday. (Note this is at 3 PM UK time, which is 9 AM central!)

RSC Peptide and Protein Science Group@rsc-ppsg.bsky.social · 9mo ago

November edition of the PPSG online webinar is taking place at 3pm, Friday the 7th November! Sign up link below: bit.ly/4hqPbTQ We look forward to hearing from our speakers: 🧪 Dr James Checco from the University of Nebraska-Lincoln 🧪 Dr Martin Spinck from the MRC Laboratory of Molecular Biology

Happy and proud to see this paper from postdoc Shubhra Saha and myself come out in JACS Au! This was a project where I really had no idea if we could get the design to work but IT DID and I think it’s quite cool. A brief rundown 1/n

Chemically Induced Dimerization via Nanobody Binding Facilitates in Situ Ligand Assembly and On-Demand GPCR Activation

Methods that enable the on-demand synthesis of biologically active molecules offer the potential for a high degree of control over the timing and context of target activation; however, such approaches often require extensive engineering to implement. Tools to restrict the localization of assembly also remain limited. Here we present a new approach for stimulus-induced ligand assembly that helps to address these challenges. This methodology relies on the high affinity and specificity recognition exhibited by antibody fragments (nanobodies, Nbs). By using Nbs that recognize short peptide epitopes to create semisynthetic conjugates, we develop a bioengineering platform termed peptide epitope dimerization (PED) in which the addition of heterodimeric peptide composed of two Nb epitopes stimulates the proximity-induced synthesis of a functional ligand for the parathyroid hormone receptor-1, a G protein-coupled receptor. We further demonstrate that high efficiency assembly can be achieved on the cell surface via Nb-based delivery of template. This approach opens the door for the on-demand generation of bioactive receptor ligands preferentially at a desired biological niche.

pubs.acs.org

🧬 Excited to share our new preprint! DMS chemical mapping, a key technique for studying RNA structure. Everyone assumes low DMS reactivity = Watson-Crick , high = non-WC. However, analyzing 7,500 RNA structures containing known 3D structures reveals it's not that simple. doi.org/10.1101/2024...

A quantitative framework for structural interpretation of DMS reactivity

Dimethyl sulfate (DMS) chemical mapping is widely used for probing RNA structure, with low reactivity interpreted as Watson-Crick (WC) base pairs and high reactivity as unpaired nucleotides. Despite i...

biorxiv.org