Ben Pedigo

@bdpedigo.bsky.social

Connectomics, neuroscience, data science, open science | Scientist @AllenInstitute | Formerly @ JHU BME, UW, MSFTResearch | 🚲 🐦 🏔

We have a new #1 Link 🚊 ridership day! On Friday, June 19, Link light rail saw about 280,000 riders, amid the USA 🇺🇸 v Australia 🇦🇺 World Cup ⚽️ match and Mariners ⚾️ home game day. 2️⃣8️⃣0️⃣0️⃣0️⃣0️⃣

ORDINANCE PASSES UNANIMOUSLY SHARED STREETS ARE LEGAL IN THE CITY OF SEATTLE THIS HAS BEEN MY DREAM FOR YEARS AND NOW IT IS HAPPENING IF YOU COME HOME FROM EUROPE WISHING WE COULD HAVE WHAT THEY HAVE THEN WHY NOT DO SOMETHING ABOUT IT SOMETIMES YOU WILL SUCCEED

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When a fly lands on your arm, how does your nervous system decide where to swat? By reconstructing tactile axons in a Drosophila connectome, we found a leg somatotopic map and downstream circuits that sample the map to initiate targeted grooming Led by Leila Elabbady, PhD doi.org/10.64898/202...

fly circuit diagram

From @bdpedigo.bsky.social: a super efficient, highly reliable, and very generalizable method for mesh structure classification, applied here to spine detection across basically every synapse onto a cell in the MICRoNS dataset.

Mesh analysis pipeline showing feature extraction and spine classification.
bioRxiv Neuroscience@biorxiv-neursci.bsky.social · 6mo ago

A quantitative census of millions of postsynaptic structures in a large electron microscopy volume of mouse visual cortex https://www.biorxiv.org/content/10.64898/2026.02.19.706834v1

I will be co-teaching a summer course at Allen Institute on connectomics education please apply. Travel support, new connectomics data sets and learning directly from the scientists who built these datasets. Details here: alleninstitute.org/events/incor...

Incorporating open connectomics data into teaching neuroscience

Learn to analyze open neuroscience data and introduce dry lab modules into your existing classes at the Incorporating Open Connectomics data into...

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Great to see the MICrONS data out, congratulations to the huge team who created this amazing data! If you have a scientific question about the data, there are resources available (including annotation and proofreading work) to help you! Submit a request to VORTEX: www.microns-explorer.org/vortex

Virtual Observatory of the Cortex - U24 — MICrONS Explorer

microns-explorer.org

allen institute@alleninstitute.org · last yr.

How does the brain work? Scientists are closer to the answer with the largest wiring diagram and functional map of a mammalian brain to date. 🧵 🧠📈

Mayor Harrell today on Pike Place: "I have a vision for our connected waterfront and Pike Place Market as one of the greatest pedestrian experiences in the country – where market patrons, visitors from out of town, and downtown residents do not have to worry about vehicle traffic." 1/2

car pushing through a crowd of people for no good reason at pike place

Deadline to apply for the Summer Workshop on the Dynamic Brain is Feb. 1! The 2025 Summer Workshop on the Dynamic Brain is an intensive, project-based residential course for graduate and postdoc researchers interested in developing their computation skills. alleninstitute.org/events/summe... 🧠📈

Summer Workshop on the Dynamic Brain 2025

The Summer Workshop on the Dynamic Brain is an intensive, project-based residential course with a focus on the neurobiology of sensory processing, coding, and neural population dynamics.

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alleninstitute.org/careers/inte... Internships and Postbac opportunities open at the Allen Institute, applications close January 7th 2025. Great opportunity for anyone interested in life sciences research or science-support careers. Spread the word!

Internship & Postbaccalaureate Programs

Students and early-career professionals in lab research, biology, neuroscience, immunology, and others should apply for our internships and fellowships.

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