Next up is Timothy Rhoads talking about splicing factor engagement and regulation of RNA processing during caloric restriction,
Aaron and the Hoskins Lab at UW Madison
@uwmadisonrna.bsky.social
Interested in science, RNA, splicing, and single molecule biophysics.
Now online! Structural basis of a SWI/SNF-associated transcription pre-initiation complex
Structural basis of a SWI/SNF-associated transcription pre-initiation complex
Cryo-EM and genetic analyses reveal that the SWI/SNF chromatin remodeler is an integral component of the transcription pre-initiation complex. The structures demonstrate how SWI/SNF facilitates transcription initiation through stabilization of PIC organization and concerted remodeling of the +1 nucleosome.
dlvr.it
Reading this from my office while taking a break from working on reviews...on Labor Day...in Wisconsin...before 10am
Read the whole article - but also bring it to your departments, your unions, your senate committees.
And here is the link if you want to see the full story: doi.org/10.1021/acsn...
Nanobodies Equipped with HaloTag Enable Scalable Fluorescence-Lifetime Multiplexing
Abstract. Fluorescence lifetime (FL) is a robust strategy for multiplexed imaging; however, variability in fluorophores’ local microenvironment when used o
doi.org
Structures of pUG-fold RNA bound to DNMT1 reveal a mechanism for RNA-mediated epigenetic regulation https://www.biorxiv.org/content/10.64898/2026.09.01.748594v1
Phosphorylation-controlled nuclear speckle dynamics regulate splicing: Trends in Biochemical Sciences www.cell.com/trends/bioch...
Phosphorylation-controlled nuclear speckle dynamics regulate splicing
Understanding how the spliceosome integrates regulatory cues to generate RNA diversity remains a central question in gene expression control. Emerging evidence reveals a multilayered framework in whic...
cell.com
Huh... I guess I'm not surprised that trans-splicing happens but I am surprised that it may be used (in humans) for a functional purpose...
Discovery of chimeric RNAs and thousands of new proteins in mammalian cells – including a new regulator of inflammasome signaling! www.nature.com/articles/s41... www.jacksonimmunology.com
Congratulations to Megan, Sicong, Aiden, and Samantha on the publication of their ASO work! dx.doi.org/10.1039/D6CB...
Submit This Form
dx.doi.org
Become our colleague at NIAMS! We’re looking for a new tenure-track investigator. NIH is an exceptional place to start a lab: fantastic colleagues across every discipline, outstanding core facilities, stable funding, and the freedom to develop a research program limited only by your imagination.
This is a very cool paper on a functional microexon (encoding 5 aa) in Arp2 from the Schroeder lab. www.biorxiv.org/content/10.1...
A microexon confers functional divergence of the actin nucleator Arp2/3
Arp2, a subunit within the actin nucleator Arp2/3, encodes two splice variants that differ by five residues in the D-loop, a critical element for catalyzing actin polymerization. It is unknown if this...
biorxiv.org
Super cool single molecule microscopy of dynein from Yldiz and coworkers
New online: Characterizing dynamics of productive dynein stepping by MINFLUX
🤯
The singular job of all known ribosomes: synthesizing protein. Enter the malaria parasite. In our new work, we show that Plasmodium evolved an entire new kind that does just the opposite - inhibit mRNA translation. www.biorxiv.org/content/10.6...
Our new paper in PNAS reports the presence of Na+ and Li+ #aptamer RNAs in mammals. The latter hints at natural roles for #lithium in humans and provides direct links to #BipolarDisorder. Now seeking funding to study Li+ biology and create new therapeutics.
Here's the official announcement of Parton's passing from her reps, along with the request that in lieu of flowers, the family asks for donations to be made to Dolly Parton’s Imagination Library at www.imaginationlibrary.com
Dolly Parton, among a thousand other amazing things she did in her life, gifted over 330 million books to kids through her Imagination Library program. Her passing is a tremendous loss to the world, but you can support the program today to keep it going imaginationlibrary.com
How do nuclear compartments form inside cell nuclei? We show RNA glues certain loci together to form a nuclear compartment. This involves special GC-rich regions of highly expressed genes that also associate with nuclear speckles, but interactions between these loci are independent of speckles!
Formation of an RNA-mediated nuclear compartment https://www.biorxiv.org/content/10.64898/2026.08.20.746005v1
Just a reminder about 3 weeks left to register for Physics of Life at the Nanoscale! Conference will be Jan. 3-8 at the Aspen Center for Physics! More information here sites.google.com/view/pln2027
Physics of Life at the Nanoscale
The Physics of Life at the Nanoscale Conference, 2027
sites.google.com
I suddenly feel seen... I'm going to start pitching in vitro splicing assays as models for splicing during oocyte development....
Transcription stops. RNA splicing takes over 🧬 ✨ Our new preprint uncovers the post-transcriptional RNA splicing landscape powering mammalian oocyte development. Read it here 👇 www.biorxiv.org/content/10.6...
@ginaelnesr.bsky.social and I are excited to release makeshift -- a lightweight package to lower the barrier for using NMR dynamics data in ML. We hope this can pave the way for more NMR-based models like Dyna-1! Preprint: biorxiv.org/content/10.6... Docs: makeshift-docs.readthedocs.io
Now online! Happy to have been part of this remarkable study on TDP-43 from the Butcher Lab @uwbiochem.bsky.social www.nature.com/articles/s41...
TDP-43 controls RNA structure through high affinity lattice interactions - Nature Communications
TDP-43 is an essential RNA-binding protein. Here, the authors show how it binds single-stranded poly(UG) RNA through high affinity 1D lattice interactions. The N-terminal domain functions to accelerat...
nature.com
A bacterial metabolite rewires fungal metabolism, triggering the hyphae-to-yeast transition www.cell.com/current-biol...
A bacterial metabolite rewires fungal metabolism, triggering the hyphae-to-yeast transition
The hyphae-to-yeast morphological transition promotes dissemination of the pathogen Candida albicans, but the mechanisms underlying this process are poorly defined. By identifying a bacterial metaboli...
cell.com
lab 2.0 in Chicago in search of a postdoc! Pursue virus-host interactions, post-translational modifications, and RNA splicing. Excellent in oral and written communication, lab and project management, and an ability to supervise and mentor trainees. sfbkrlab.org www.careers.luc.edu/postings/35620
sfbkr lab
We study how host alternative splicing shapes the outcome of influenza virus infection — from cryptic isoforms that antagonize the polymerase to the ANP32 proteins that support it.
sfbkrlab.org
HAHAHAHAHAHAHAHAHAHAHAHAHAHA! EPIGENETIC HULK LIKE THIS SMASH! NO SMASH NOTES! www.cell.com/cell-genomic...
Single-cell 3D genome imaging shows super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting
Super-enhancers have been proposed to cluster in the nucleus when compared to other genomic elements. Le et al. found that super-enhancer clustering was rare and driven by non-specific interactions. P...
cell.com
Result in high-risk patients validates decades of research into mRNA-based therapeutic cancer vaccines. on.wsj.com/4zwRduC
Moderna, Merck Vaccine Succeeds in Preventing Melanoma From Returning
Result in high-risk patients validates decades of research into mRNA-based therapeutic cancer vaccines.
on.wsj.com