I need David Tabb's email. Can you help me?
Where's Waldo? DreamWorks Animation
ALT: Where's Waldo? DreamWorks Animation
static.klipy.com
MetaMorpheus
@metamorpheus.bsky.social
The number of people using expensive, black-box software for proteomics is bewildering.
Are you curious about what steps you need to do to analyze very large multi-plex TMT datasets? This is a reanalysis of some Gygi Lab mouse liver data from 2015 and 2021 with 14.5 million MS2/MS3 scans in total. The big data needed a big discussion (kind of a long read). github.com/pwilmart/mou...
GitHub - pwilmart/mouse_liver_TMT_reanalysis: Reanalysis of large-scale TMT mouse liver studies (2015 and 2021) from the Gygi Lab.
Reanalysis of large-scale TMT mouse liver studies (2015 and 2021) from the Gygi Lab. - pwilmart/mouse_liver_TMT_reanalysis
github.com
metaproteomics?????? skeptical scientist here: but, let's say for argument sake you wanted to confidently identify an adventitious bacterial protein in human plasma, is there a "gold-standard" method? I assume the search result is merely the start point.
There is a position open in our lab, within this network. Our project deals with assessing identification and quantification errors for MS-based proteomics. www.protaiomics.eu/project/dc13... Please check out all the project descriptions at the site below:
DC13-KTH – ProtAIomics
STOCKHOLM
protaiomics.eu
@protaiomics.bsky.social · last yr.🌟Ready to apply? 16 fully funded PhD positions are open in ProtAIomics Doctoral Network! Join 16 labs across Europe to advance AI-powered proteomics and drive discoveries in health & biotechnology. 👉 Apply here: www.protaiomics.eu #Proteomics #ArtificialIntelligence #MSCA #PhDOpportunities
Referee questioned the adoption/accessibility of lc-ms to the research community. I think that's reasonable. So, realistically, how big of a problem do I need to solve to make my method worth the investment and effort? What is a thoughtful response to this critique?
Improved Detection of Differentially Abundant Proteins through FDR-Control of Peptide-Identity-Propagation pubs.acs.org/doi/10.... --- #proteomics #prot-paper
Hey Team Proteomics. New release of MetaMorpheus now natively supports Bruker .d files for DDA PASEF. Also now supporting .msalign as inputs. get your copy free now while they last: github.com/smith-chem-w...
Releases · smith-chem-wisc/MetaMorpheus
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities - smith-chem-wisc/MetaMorpheus
github.com
Stop by poster ThP 289 to… calmly discuss… metadata collection and management with Anastasiya 👏 #ASMS2025
Does a print (paper) version of JPR still get published?
a man wearing glasses says just wonderin ' on a prime video poster
ALT: a man wearing glasses says just wonderin ' on a prime video poster
media.tenor.com
Two new IsoDec tutorial videos to go over top-down proteomics searching with a few different workflows, one with TopPIC and the other with MetaMorpheus @metamorpheus.bsky.social : youtu.be/OTQbplEezLQ and youtu.be/56OZJph48BU
IsoDec Tutorial 2: Analyzing LC-MS in the UniDec GUI with TopPIC search
YouTube video by Michael T Marty
youtu.be
In a 2 year period, we have had three major DIA software platforms (one open source) establish companies. The newest, Fragmatics, is now licensing MSfragger instead of the University of Michigan. www.fragmatics.com
Europe’s choice is clear. To put science at the heart of its economy. To become the home of scientific freedom and collaboration. And to welcome talent from all over the world. I’m glad to present the first elements of our Choose Europe Initiative. → europa.eu/!TTbWbJ
EU augments opportunities for scientists around the world to launch or re-launch their careers in Europe.
Ursula von der Leyen@vonderleyen.ec.europa.eu · last yr.Europe’s choice is clear. To put science at the heart of its economy. To become the home of scientific freedom and collaboration. And to welcome talent from all over the world. I’m glad to present the first elements of our Choose Europe Initiative. → europa.eu/!TTbWbJ
Nobody could have imagined that this great global democracy, whose economic model depends so heavily on free science,.. was going to commit such an error – Emmanuel Macron www.youtube.com/watch?v=N-Rl...
"Science is an investment. We will put forward a new 500 million package for 2025-2027 to support the best and the brightest researchers and scientists from Europe and around the world." — President @vonderleyen.ec.europa.eu at the ‘Choose Europe for Science' event at La Sorbonne 🇫🇷
Maybe ignore the news for a bit… and listen to this week’s #THEProteomicsShow. Me and @proteomicsnews.bsky.social got to chat with @metamorpheus.bsky.social and it was lovely. Find it wherever you find fine podcasts, or here: anchor.fm/theproteomic...
New to proteomics?? We have like one rule! Make your data available!! proteomicsnews.blogspot.com/2025/04/subm...
Submitting your first proteomics paper? Do this or don't bother submitting it!
We are SO SO SO very excited that you are moving past the GENotype and are intertested in actually measuring PHENOtypic data (or close to it...
proteomicsnews.blogspot.com
Here are a couple of thoughts I had "for the next generation" of analytical scientists. www.chromatographyonline.com/view/a-messa...
A Message to the Next Generation: An Interview with Michael Shortreed
In the final part of our interview with Michael Shortreed, he shares the most important lessons he would like the next generation of mass spectrometrists to learn.
chromatographyonline.com
Discussed the importance of my many mentors with Aaron Acevedo. I'm feeling so much gratitude for all those that took time to train and inspire me. www.chromatographyonline.com/view/influen...
Influencing Software and Reflecting on Mentors: An Interview with Michael Shortreed
In the second part of our interview with Michael Shortreed, he reflects on how his work is used in laboratories worldwide and discusses those who mentored him throughout life.
chromatographyonline.com
I'm about to post some conversations I had with Aaron Acevedo, that are now published in LC/GC. The first video discusses the @asms.org Al Yergey award and what it means for me to receive it. www.chromatographyonline.com/view/the-pat...
The Path to the Al Yergey MS Scientist Award: An Interview with Michael Shortreed
In the first part of our interview with Michael Shortreed, we discuss his winning the Al Yergey MS Scientist Award and learn about his research on computational methods.
chromatographyonline.com
A few more spots are still open for some of the in-person programs at May Institute on Computation and Statistics for Mass Spectrometry and Proteomics on April 28 – May 11, 2025 on the campus of Northeastern University in Boston MA computationalproteomics.khoury.northeastern.edu
May Institute – Computation and statistics for mass spectrometry and proteomics
computationalproteomics.khoury.northeastern.edu
Free copies of MetaMorpheus available for an unlimited time. Get yours now before they are all gone! github.com/smith-chem-w...
GitHub - smith-chem-wisc/MetaMorpheus: Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities - smith-chem-wisc/MetaMorpheus
github.com
Markovich et al. have identified dehydroamino acids (DHAAs) as a novel posttranslational modification in Alzheimer’s disease protein aggregates, potentially driving aggregation via protein crosslinking, especially in Tau protein. Please read at: buff.ly/3EQtOfP @metamorpheus.bsky.social
If you want to try it out, IsoDec is bundled with UniDec, and there is a simple GUI for doing individual spectra and full files. For doing full top-down proteomics searches, we've bundled it into @metamorpheus.bsky.social, where it really shines!
May Institute on Computation and Statistics for Mass Spectrometry and Proteomics @KhouryCollege @Northeastern in Boston MA is happening in person on April 28-May 11, 2025 and is accepting applications! You will not regret attending computationalproteomics.khoury.northeastern.edu
May Institute – Computation and statistics for mass spectrometry and proteomics
computationalproteomics.khoury.northeastern.edu
Some folks a whole lot smarter than me put together this white paper outlining what "open-source" means to us. I learned some new things. Come join us on the happy road. Open-source and FAIR Research Software for Proteomics | ChemRxiv - go.shr.lc/3B7rRtW
Open-source and FAIR Research Software for Proteomics
Scientific discovery relies on innovative software as much as experimental methods, especially in proteomics, where computational tools are essential for mass spectrometer setup, data analysis, and in...
go.shr.lc
Recently, We saw a discussion on the role of open-source in proteomics. Here, experienced developers & researchers maintaining OS tools for years shared this comment to guide newcomers in the field about OS and its role in the field. 💻 #Proteomics #OpenSource chemrxiv.org/engage/chemr...
Open-source and FAIR Research Software for Proteomics
Scientific discovery relies on innovative software as much as experimental methods, especially in proteomics, where computational tools are essential for mass spectrometer setup, data analysis, and in...
chemrxiv.org