Padmanee (Pam) Sharma, MD, PhD

@pamsharmamdphd.bsky.social

Immunologist. Oncologist. Mom. Wife. #endcancer

How many Nobel Laureates can you name? It was an absolute pleasure to spend time with friends, including Sid Mukherjee & Doug Hanahan & Sabeena Merchant, and to hear stories of science, dedication & teamwork that led to the Nobel Prize for these brilliant, compassionate, fun & badass individuals!

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Working on my end-of-year analysis for public health and came across this shocking statistic: The percent of Ameircans vaccinated for the flu has dropped from 67% in 2019 (pre-COVID) to 38% today. Influenza has been a leading cause of death in America almost every year since at least 1980.

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Intro time! I'm Hind, a mucosal #immunologist working in KU Leuven on mast cells in health and in gut disease. Speaking of, I can finally show what I have been working on for the last 4 years, ie characterizing human mast cells in layers of the colon via scRNAseq www.biorxiv.org/content/10.1...

Single cell transcriptomics reveal mast cell heterogeneity in the human gut

Gut mast cells are key players in infection and inflammation, as well as in homeostasis. Mast cells regulate gastrointestinal (GI) function by controlling vascular and epithelial permeability, and int...

biorxiv.org

Noor (@noorpratap.bsky.social) has been working on this for quite some time! It took a bit of work to figure out, but now you can map your scATAC-seq reads directly to the genome and sort and dedup them with alevin-fry-atac. You get a BED file with counts ready for downstream analysis! 1/

bioRxiv Bioinfo@biorxiv-bioinfo.bsky.social · 2y ago

Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment https://www.biorxiv.org/content/10.1101/2024.11.27.625771v1

Friends, it's fun to see the #immunology community continue to grow! I created a 4th Starter Pack to help folks find each other. If you're an immunologist and you don't see yourself on the lists, let me know 🧪 go.bsky.app/PY5tCas go.bsky.app/FmERUoD go.bsky.app/6aT6qDS go.bsky.app/QSEPDoj

Rod Rahimi@rodrahimi.bsky.social · 2y ago

Friends, the second #immunology starter pack filled in 3 days! I started a third to help folks new to BlueSky rebuild their network Below are the links If you're an immunologist and I have missed you so far, let me know 🧪 go.bsky.app/PY5tCas go.bsky.app/FmERUoD go.bsky.app/6aT6qDS