The joy that follows from finally finding a shop that sells Czech beer in the Paris metro area >>>>
Will Shoemaker
@shoestrapped.bsky.social
Microbial life scientist applying principles from physics CNRS Chaire de Professeur Junior @ Genoscope 🇫🇷 Grilli lab alumni @ ICTP 🇺🇳/🇮🇹 Lennon lab PhD @ IUB 🇺🇸 https://wrshoemaker.github.io
I’m sure it’s happened before but I can’t recall a candidate winning a statewide nomination while being outspent ~9:1
Unfathomable
Beautiful work (Petrungaro, Bollenbach lab) on evo trajectories toward abx resistance (E. coli). Goes beyond many other studies in its attention to the experimental setup (identical selective pressure across all lines). I strongly recommend reading the entire paper! www.nature.com/articles/s41...
Function-specific epistasis shapes evolutionary trajectories towards antibiotic resistance - Nature Communications
Antibiotic resistance can evolve through the combination of factors but the predictability of this is unclear. Here, the authors used high-throughput evolution experiments to reveal that antibiotic re...
nature.com
“This complete mutagenesis of a biological system quantifies the limits of our current understanding of, and ability to predict, molecular biology.”
1st genome sequenced (Sanger 1977), 1st genome synthesised (Venter 2003), 1st genome + proteome fully mutated (Huijin Xiangua 2026!) @crg.eu @sangerinstitute.bsky.social Complete Mutagenesis of the Genome and Proteome of ΦX174 www.biorxiv.org/content/10.6...
More math tourism: the library at Trinity College Dublin. Now with busts of female scholars, like Ada Lovelace (2023).
as I understand the situation, the truly, truly perverse part of all this is that Anthropic siphoning a rare book’s information into its corpus is only legal *because* 1) they destroyed the original and 2) they are not sharing that information with archive.org or anyone else
No longer content with pillaging intellectual work and dismembering our environment (already critically weakened), AI companies are now hellbent on destroying books galore including rare editions. Shut down these nefarious enterprises already.
The adaptive landscapes of three global Escherichia coli transcriptional regulators @elife.bsky.social by @cauawest.bsky.social et al elifesciences.org/articles/103...
Ridiculous. Dunes Sagebrush Lizard Stripped of Endangered Status by Judge www.nytimes.com/2026/07/22/c...
Judge Strips Protections for Imperiled Lizard at Trump Administration’s Behest
nytimes.com
Some context on US academic labor, screenshot from Adam Tooze’s Chartbook. Serving UAW 5810 while at UCLA was an immensely rewarding experience.
This is a government centered on, and gleefully advocating for, predation in all its forms
"The U.S. Fish and Wildlife Service could soon declare that pygmy rabbits or Florida manatees are threatened with extinction. But under a policy change issued by the Trump administration on Friday, Americans could still kill, trap and harass them."
Excited that this is finally out, led by @jhuisman.bsky.social with Jeff Gore, combining experiments, theory and natural microbiome data! As salinity rises, diversity and individual species growth rates fall, yet community's overall growth stays robust: faster growers take over and keep it going.
Out Now! Predictable shifts in microbial species composition lead to community-wide robustness to environmental stress #MicroSky
BREAKING: Electrification Action Plan dropped. The EU just committed to doubling electrification: 46% of final energy consumption by 2040, up from 23% today, where it has sat for a decade. My rapid response analysis of the Electrification Action Plan: open.substack.com/pub/janrosen...
Nine times faster: the EU wants to double electrification by 2040
The Commission has launched its Electrification Action Plan. A 46% target and some serious policy measures.
open.substack.com
Or much of a drop in public support. Fascinating example of elite consensus switching despite popular opinion.
In two years Net Zero went from broad political consensus to politically toxic, without any particular scandal over the policy.
hello all!! Big Drop Today we are launching a manifesto for our framework for the next US supply-side economic consensus -- The Productive State -- at Forces of Production www.forcesofproduction.com/p/the-produc...
The Productive State
On Governing The Supply Side
forcesofproduction.com
> Continuing our long history of Cuban solidarity via political education, resource sharing, material aid, and direct visits, we urge SftP members [...] to join the global movement for an organized peoples’ struggle against Western hegemony and the US war machine @scienceforthepeople.org.web.brid.gy
Blog – Science for the People
scienceforthepeople.org
An important paper about protecting science from political interference. Europe needs to defend its science against the kind of attacks unfurling in the US. By Martin McKee, Christina Pagel & Tiago Correia in the European Journal of Public Health: academic.oup.com/eurpub/artic...
Europe must learn from America’s assault on science
In June 2026, several prominent diabetes researchers, including Steven Kahn, editor-in-chief of Diabetes Care, were removed by police from the annual meeti
academic.oup.com
Great to see this important study published. For some time I've pointed to the preprint version when students ask about co-evolution between humans and their microbiota. "Limited codiversification of the gut microbiota within humans"
Cool new work on the quantification of species interactions over time, led by former labmate Javier Aguilar journals.aps.org/prxlife/abst...
I'm hiring! Two positions at Inria Bordeaux in complex systems: One software engineer, for development of a causal inference package: recrutement.inria.fr/public/class... One postdoc, on the inference of causal structure and causal dynamics: recrutement.inria.fr/public/class...
Natural history on canvas: Brueghel knew about bird-eating noctule bats Just published in @pnas.org, OA for all eyes Led by the one-and-only @romero-vidal.bsky.social, with the amazing @elena-tena.bsky.social and Sonia Sánchez-Navarro @ebdonana.bsky.social LINK: www.pnas.org/doi/10.1073/...
To #migrate is a decision that depends on others. This has overlooked dynamical consequences. New #preprint with @kushwaha.bsky.social and Woi Sok Oh Collaboration between @csh.ac.at @uwaterloo.ca #NonlinearDynamics #Physics #Complex arxiv.org/abs/2606.30604 (1/5) 🧪🦋
Pulses, waves, and cascades in collective migration dynamics
Decisions to migrate depend on others' decisions. Dependence can produce nontrivial dynamics. We propose a minimal migration model that accounts for social influence alongside individual heterogeneity...
arxiv.org
Great week @ ICBP in Genova. Very much enjoying the new position in France but it’s nice to be back in the land of spritz Campari. Much thanks to the organizers 🏴
This is an important new paper. When we allocate responsibility for emissions, it's normally in terms of consumption. We tally up direct household emissions (eg, from household energy use) plus the emissions embodied in all the stuff that a household consumes.
What do single bacterial cells do when they run out of carbon source? If you missed the preprint, check out the official publication: doi.org/10.1038/s443... If the total bacterial population on earth stays roughly constant, then there must on average be as much death as replication. 1/n
E. coli prepares for starvation by dramatically remodeling its proteome in the first hours after loss of nutrients - Molecular Systems Biology
Although in the wild bacteria likely spend most of their time deprived of nutrients and slowly starving to death, very little is known about how bacteria adapt their phenotype to starvation. Here we combine microfluidics with quantitative fluorescence microscopy of transcriptional reporters to comprehensively quantify growth and gene expression at the single-cell level in E. coli during carbon starvation. We find that all cells immediately stop growing upon loss of carbon source and that almost all remain alive for over 30 hours. Furthermore, entry into starvation triggers a dynamic expression program that is remarkably homogeneous across single cells, but highly variable across genes, causing dramatic remodeling of the proteome early in starvation. We further show that, as protein production and the rate of protein degradation both decay approximately exponentially, protein concentrations become essentially ‘frozen’ after the first 5 to 10 hours, setting phenotypes for several days of starvation. Finally, using experiments in which gene expression is inhibited for different periods, we show that protein production in the first 5 hours is crucial for protecting cells from stresses late in starvation.
doi.org
"Perhaps Hobsbawm’s canonization—his “myth,” to borrow Chabal’s term—was a Western tribute to a great historian who had erected a monument to Europe at the time of its decline." Enzo Traverso on Emile Chabal's intellectual biography of Eric Hobsbawm: www.theideasletter.org/essay/the-ce...
The Century of Eric Hobsbawm
Eric Hobsbawm’s enduring power lay in his ability to synthesize vast historical processes into compelling narratives that made the modern world legible. Yet, argues Traverso, the celebrated Marxist hi...
theideasletter.org
Cross-feeding/protection between microbes can promote gene loss, but not always. In this COMICR review, @ofsheff.bsky.social, Ella Chuang, and I discuss the constraints on adaptive gene loss during metabolic interactions. Access for free until Aug 15: authors.elsevier.com/a/1nKlj4tPFp...