Miguel 💻🧬
@ahmig.es
Bioinformatician and PhD candidate @pathogenomics.bsky.social, @i2sysbio.es | Pathogen evolution and metabolic reconstruction of pathogens biotech BSc USAL & bioinfo MSc @uv.es 💻 github.com/ahmig | tangled.org/ahmig.es | ahmig.es 📍 València
This is very well-written and made me very sad: kirwinhampshire.substack.com/p/the-dark-n...
The Dark Night of Mathematics
What are we really doing?
kirwinhampshire.substack.com
Major wildfires continue in parts of Europe🔥 Satellite imagery shows widespread smoke across Portugal, Spain and near to Bordeaux. There's little prospect of any rain relief and the heat will even intensify for some, with temperatures of over 40°C possible in places📈
This puzzle is in my first book (the one no one reads), and I know Claude ate my books (bc I got part of that copyright settlement against Anthropic), so here's Claude's answer, from my book. The whole chapter is about this puzzle basically, builds answer using covariance genetics.
Saloni@scientificdiscovery.dev · 2mo agoDarn. How will I get answers to the important questions in my life?
#BCBToolsSeminars Join the next session on June 3 at 11h with Miguel Alvarez Herrera (I2SYSBIO-CSIC) & David San León (CNB-CSIC), presenting VIPERA & MIPERA and FLYCOP. Live streaming available! 👉 goo.su/2WCzwt @i2sysbio.es @cnb-csic.bsky.social Don´t miss it!
I find it incredibly telling when men like Dawkins are convinced that the LLMs are ‘intelligent’ because it ‘agrees’ with them or tells them how insightful or clever they are
Haiku fortuito nº 544 Todo el mundo a pedir su prórroga de alquileres
Guillermo Zapata@gzapata.bsky.social · 5mo agoPresionan porque saben que lo pierden. Todo el mundo a pedir su prórroga de alquileres.
I made it my life mission to reference this as many times as I can
Our preprint on the first reconstruction of the core metabolic network of Xylella fastidiosa is now available! Using this model, we were able to design defined minimal media and guide our hypotheses about how this bacterium assimilates acetate and produces polyamines, with in vitro validation 🧪👀👇
bioRxivpreprint@biorxivpreprint.bsky.social · 5mo agoA metabolic model based on a pangenome core unveils new biochemical features of the phytopathogen Xylella fastidiosa https://www.biorxiv.org/content/10.64898/2026.03.23.713690v1
🧵El planeta Dune, también conocido como Arrakis no solo ha fascinado a los lectores de Frank Herbet, también a los científicos, que han tratado de simular el clima de este mundo cubierto de arena. En este artículo nuestro compañero David Quintero os cuenta más sobre Dune aemetblog.es/2026/03/30/c...
Clima en el planeta «Dune»
¿Cumple este planeta las leyes de la física? Descúbrelo en #AEMETBlog
aemetblog.es
Our institute #I2SysBio ( @csic.es / @uv.es ) celebrates its 10th anniversary! 🎉🍾 Ten years of advancing #systemsbiology, fostering collaboration, and pushing the boundaries of research to better understand life's complexity #science www.i2sysbio.es/communicatio...
The Institute for Integrative Systems Biology celebrates its tenth anniversary with a commemorative event at the Parc Científic of the University of Valencia
<p><strong>The Institute for Integrative Systems Biology celebrates its tenth anniversary with a commemorative event at the Parc Científic of the University of Valencia</strong></p> <p> <...
i2sysbio.es
Happy Bioinformatics Day!🧬💻Celebrate the power of data for understanding life at every level. In @pathogenomics.bsky.social we combine experiments with bioinformatics to understand bacterial evolution, virulence, and infection dynamics. #SoyBioinformatica @paururo.bsky.social @ahmig.es @i2sysbio.es
Sharing my entry for @i2sysbio.es's BioVision 2026! "MTB 20:02" is a night photograph of the metabolic network of M. tuberculosis hovering near our building at night (made in Blender, based on iEK1011) methods 🤓👉 tangled.org/ahmig.es/biovision2026 #b3d
"you need to learn how to use gAI or you'll get left behind!" counterpoint! the absolute fastest way to render yourself unemployable is to build your skillset around a tool that does your thinking for you, that everyone has access to, and that one company can change or take away at any time
Euphoric for my institute @i2sysbio.es receiving the 2nd @csic.es Sustainability Prize. Proud of the tireless & impactful work of our Committee. Especially happy to share recognition with friends from IDAEA & @geo3bcn-csic.bsky.social. Congrats @icmabcsic.bsky.social and @ibmb-csic.bsky.social
2️⃣ Desde el @i2sysbio.es presentan sus medidas y, entre ellas, su trabajo para obtener las certificaciones internacionales de investigación sostenible
Distintivo de Sostenibilidad del CSIC. Segundo puesto I2SysBio
Enjoy the videos and music you love, upload original content, and share it all with friends, family, and the world on YouTube.
youtu.be
Happy birthday to one of my favourite haters, Charles Darwin
VIPERA v1.3.0 is out!! 🐍🐍🐍 under the hood: visualization decoupled from computation, faster allele freq distance calculations using a custom tool (afwdist) and improved performance on the user side: same inputs and outputs, a few options removed or renamed, clearer docs and a prettier report 🧪👇
GitHub - PathoGenOmics-Lab/VIPERA: A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis - PathoGenOmics-Lab/VIPERA
github.com
VIPERA v1.2.2 is out!! 🐍 now you can swap in different stats (useful for non-linear allele freq trends). also: new Docker images on release, containerized CI, updated envs, and minor bug fixes for smoother, reproducible intra-patient SARS-CoV-2 analyses 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
GitHub - PathoGenOmics-Lab/VIPERA: A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis - PathoGenOmics-Lab/VIPERA
github.com
FACT THREAD on New Interstellar Object #A11pl3Z This story unfolded pretty fast yesterday for a few reasons. The object was discovered on July 1st UTC by the Asteroid Terrestrial-impact Last Alert System, or ATLAS team. A #NASA funded survey at the University of Hawaii. atlas.fallingstar.com 🔭🧪
So uh, there's a new interstellar object discovered at Chile yesterday. Name is A11pl3Z, has a hyperbolic trajectory of eccentricity 14±4 (WTF). Currently appmag 18, 4 AU away from Earth, and coming to 2 AU perihelion this October. (tagging🔭☄️) Observing it with remote scope rn, calling astronomers..
Pseudo-MPEC for A11pl3Z
projectpluto.com
On June 20, #I2SysBio (@csic.es - @uv.es) hosted Alva Saa from association PRISMA, who shared ten key measures to foster #LGTBIQA+ 🏳️🌈 inclusion in #science. The talk addressed actions like staff training, safe reporting channels, and collective visibility in research. 🌐 i2sysbio.es/communicatio...
VIPERA v1.2.1 is here!! 🐍🐍🐍 Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
GitHub - PathoGenOmics-Lab/VIPERA: A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis - PathoGenOmics-Lab/VIPERA
github.com
Just back from MCEB 2025 in Granada! I presented our year-long work expanding VIPERA🐍 to help us better track pathogen evolution, here at @pathogenomics.bsky.social - @i2sysbio.bsky.social. I learned so much and returned full of ideas! Thanks to @bcbhubcsic.bsky.social for funding my attendance! 🧪
Gentes de Bluesky, firmad esto que es importante: iniciativa ciudadana europea para prohibir las "terapias" de conversión de personas LGTBIQ+. NO es un change.org, puede suponer un cambio legal real. Y no lo dejéis para luego, que se acaba el sábado. eci.ec.europa.eu/043/public/#...
European Citizens' Initiative
Give your support !
eci.ec.europa.eu
saw an egyptian vulture! an alimoche! #birds
Egyptian Vulture (Neophron percnopterus)
Egyptian Vulture in April 2025 by ahmig
inaturalist.org