Alex Matia

@alexmatia.bsky.social

Postdoc fellow investigating the mechanisms of viral neuropathogenesis @StanfordMed and @CZBiohub | PhD in Poxvirus ☣️ @CSIC #viromics #poxrocks #flavis

Preprint out! We optimized synchro-PASEF for phosphoproteomics & found equivalent biological insights to dia-PASEF despite fewer total IDs. Practical tip: apply retention time summation factor 2 to any PASEF phosphoproteomics data—you'll gain IDs and precision. www.biorxiv.org/content/10.6...

Systematic optimization and benchmarking of synchro-PASEF for high-throughput phosphoproteome profiling

High-throughput data-independent acquisition (DIA) workflows paired with short chromatographic separations are increasingly adopted for systems biology and clinical proteomics. However, narrower peak ...

biorxiv.org

Thrilled to share the first major preprint from the lab. Viruses are classically viewed as targets of host sensing. Do viruses also sense and respond to the host? We propose viruses may act as “biosensors” of the host signaling state. A thread👇🏾 www.biorxiv.org/content/10.1...

Global Landscape of Human Kinase Motifs in Viral Proteomes

Viruses are classically viewed as targets of host sensing, yet whether they also sense and respond to host cues remains largely unexplored. We propose that host-driven post-translational modification ...

biorxiv.org

Europe's record mosquito-borne disease activity could signal new normal Rising temperatures, longer summers, milder winters, and changing rainfall patterns are creating more favorable conditions for mosquito populations. www.cidrap.umn.edu/c... Photo: Judy Gallagher/Flickr cc

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