Josh Knecht

@knechtfour.bsky.social

PhD student studying evolutionary genetics at Binghamton University.

"How two hybridizing monkeyflowers resist phenotypic homogenization" I'm very happy to share this. We would really appreciate your feedback!

Slide with the title and authors list of a manuscript along with illustrations of the monkeyflowers Mimulus guttatus (left) and Mimulus glaucescens (right). In the background, a Manhattan plot with outlier loci and QTL locations.
Title: Maintenance of phenotypic divergence in two sympatric monkeyflowers with weak reproductive isolation
Authors: Henry Arenas-Castro, Cage Cochran, Quinn Evans, Hongfei Chen, Jenn M. Coughlan
Manuscript: bioRxiv, 10.64898/2026.07.28.741377
Jenn Coughlan@jenncoughlan.bsky.social · 3d ago

So proud of this manuscript- lead by the fantastic @henryarenas.bsky.social with two undergraduates (Cage Cochran and Quinn Evans) each doing a Herculean effort during their honors theses, and Hongfei Chen helping out tremendously with lab work. www.biorxiv.org/content/10.6...

Several folks noted this was unfair. some other unis also don’t top off or require PIs to. Also all the PIs I know are doing their best to resolve this. So perhaps instead of “don’t come to UCD” i should have said “make sure you figure this out no matter where you’re going”.

Jeffrey Ross-Ibarra@jrossibarra.bsky.social · 2w ago

UC Davis will no longer pay the difference so that GRFP recipients earn the same as other students. So mid-PhD students will lose nearly 25% of salary & new students will make less than their peers. Apply for the GRFP, it’s a wonderful help to your career. Just don’t come here if you get one.

The Schatz Center is hiring a Research Technologist in Forest Genetics. If you are a recent graduate and interested in getting experience in interdisciplinary research that spans the lab, the field, and the greenhouse - this position is for you! psu.wd1.myworkdayjobs.com/PSU_Staff/jo...

Part-Time Research Technologist - Forest Genetics

APPLICATION INSTRUCTIONS: CURRENT PENN STATE EMPLOYEE (faculty, staff, technical service, or student), please login to Workday to complete the internal application process. Please do not apply here, a...

psu.wd1.myworkdayjobs.com

Let biological sex be multifaceted, as all biology is. And when you need to be precise in scientific research, be precise. Say ‘gametic sex’ or ‘chromosomal sex’ or ‘anatomical sex’, or whatever is appropriate to your own work.

Whatever actually happened in Maine, this much is clear Immigrants aggressively chased by goons in unmarked vehicles know instinctively that if they stop a) their family will be broken forever and b) they're headed to a gulag where folks die from neglect So they panic And ICE murders them

I grew up in the Buffalo suburbs if any botanists want suggestions of things to do in the city. Strong suggestion: have a passport if the US/Canada border is not something you have reason to avoid. Both for some additional Niagara Falls options, and the fantastic Royal Botanical Gardens.

Botanical Society of America@botsocamerica.bsky.social · last mo.

SAVE THE DATE! #Botany2027 is heading to Buffalo, NY, July 31-August 4, 2027! Lake Erie shoreline, Niagara Falls nearby, and a rich variety of native flora await. Get ready to shuffle off to Buffalo with your botanical science community! More details soon. #IamaBotanist #BotanistsinBuffalo

How good is MiniBWA, the successor to BWA? To test it, I ran MiniBWA on sequencing from 76 different species, comparing mapping speed, rate and accuracy with BWA MEM. In short, it's really good. If you map short reads, it's well worth your time. andrewcarroll.github.io/2026/06/30/t...

The Best of Both Worlds - Assessing MiniBWA

Recently, Heng Li released MiniBWA (GitHub) alongside a paper by Heng Li and Nils Homer describing the method (paper). MiniBWA builds on the approaches in Minimap2 (also by Heng Li), but falls back on...

andrewcarroll.github.io