All BrainGlobe atlases now have Neuroglancer links so that you can explore atlases in the browser without needing to download them first! All links here: brainglobe.info/documentatio... Here you can view our Eurasian Blackcap atlas: neuroglancer-demo.appspot.com#!https://bra...

New Toettchlab paper alert! Harrison Oatman just published his beautiful work combining software design for "smart" microscopy+optogenetics and some really beautiful work understanding EGFR-driven collective cell migration. www.cell.com/cell-systems...

Microscopy Nodes 3.1 is out for Blender 5.2! 🎉 This has cool new features for conditional masking, working with even larger data (regional upscaling), and data manipulation! Watch the new youtube tutorials that explain the features: www.youtube.com/playlist?lis...

Launch of our brand-new website for 𝐃𝐞𝐞𝐩𝐎𝐅! 🚀 👉 Explore: deepof.ai

We do an awful lot of looooong video recordings in our lab and have long wanted an easy way to clip, compress and combine videos for our workflows. So here's #croppy! 🦀 I hope others will find it useful too - I'd love to hear if you do! And would appreciate if you give it a star on Github! 🌟

Daniela Rößler@roesslerdaniela.bsky.social · 4w ago

Our postdoc @roald-arboel.com made a thing! #Croppy is #free and awesome for fast and effective #video #editing and it has a #GUI! Need to crop a part of a video? Need to trim a video? Need to combine videos? Need to compress a video? roald-arboel.com/croppy/

I'll be in Barcelona for #FENS2026 next week, presenting a poster about movement, and also hanging around our team's other posters (details in quoted post). Drop by if you want to chat about any of these projects or just to say hi!

SWC/GCNU Neuroinformatics Unit@neuroinformatics.dev · last mo.

The Neuroinformatics Unit is going to #FENS2026. Come and chat to us if you're interested in open source neuroscience software!

Working with OME-Zarrs in @napari.org ? Check out the newest release of napari-ome-zarr-navigator to make your life easier & allow more interactive ways to write back to OME-Zarrs. Follow the thread for more (1/5 🧵)

The University of Exeter have announced a programme of academic staff cuts, including all of www.exeter.ac.uk/research/gro... Sign the open letter of support at docs.google.com/forms/d/e/1F... @crab-exeter.bsky.social

Centre for Research in Animal Behaviour (CRAB) | Research Groups | University of Exeter

exeter.ac.uk

🌟 NEW OCTRON RELEASE! 🌟 Want to track your animals using the command line? You can now train models and predict videos with single prompts in a terminal! Ideal for batch jobs, headless servers, and remote machines. Big shout-out to @roald-arboel.com for helping with this release!

1/ 🧬🔬 How does one cell become an entire animal? We can now film it in 3D 🐟, but turning those movies into accurate cell tracks is brutally hard. Enter our new #Kaggle challenge: $60K prize pool, to help crack 3D+time cell tracking at scale! 🧵👇 www.kaggle.com/competitions... @biohub.org

Posit has joined the Jupyter Foundation! 🎉 @jupyter.org has powered interactive computing across our tools for years, from Notebooks to the kernels behind Positron. Now we're helping fund the infrastructure and community that keep it thriving. Read the blog: opensource.posit.co/blog/2026-06...

📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...

UZH: Bioimage Analyst

The University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp...

jobs.uzh.ch

Neuromatch Academy & @connectedminds.bsky.social are forming a #ComputationalBehaviour Course Creation Committee!. It's a #volunteer role for researchers w a PhD. 🤓 Learn more about the course: neuromatch.io/computationa... 🙋 Full role description and application: neuromatch.io/volunteer/

Come join me for a all new slidecrafting workshop! 2 hours of all new content, teaching you to go from zero to hero in quarto slides! It is free and open to anyone, very minimal quarto knowledge required, we are starting with the basics! pos.it/slide-wrkshp #quarto #slidecrafting

Slidecrafting Workshop with Emil Hvitfeldt

This will be a 2-hour workshop (with a short break) led by Emil Hvitfeldt all about making great slides in Quarto! Wed, Aug 12, 2026 12:00 PM EDT

pos.it

datashuttle is now published in JOSS! A tool to automate the creation, validation & transfer of standardised neuroscience project folders — GUI or Python API. The GUI works on all operating systems, even remotely via SSH! More details: datashuttle.neuroinformatics.dev #neuroscience #openscience

Journal of Open Source Software@joss-openjournals.bsky.social · 2mo ago

Just published in JOSS: 'datashuttle: automated data management for experimental neuroscience' https://doi.org/10.21105/joss.09642

v0.17.0 of movement released! 🧠🧪 This version includes new path analysis functions along with a number of bug fixes. Importantly there are some small breaking changes, so please read the release notes to see how your code may be affected. More details: github.com/neuroinforma...

Job ad (1/2): Postdoc fellowship in the AFNI group (SSCC, NIMH, NIH, USA). FMRI/MRI methods dev, software design, statistics, analysis, data viz, quality control, machine learning and more! Please see: discuss.afni.nimh.nih.gov/t/job-ad-pos... I am happy to chat at OHBM+Brainhack. Please share!

We've started an effort to bring every 3D (non-human) anatomical atlas that exists into BrainGlobe. Get in touch if there's an atlas we've missed, or you think there's a specific atlas we should prioritise. Read more in our blog: brainglobe.info/blog/the-sys...

We are very pleased to announce Dr Adam Tyson @adamltyson.com of the @sainsburywellcome.bsky.social as winner of the RMS Life Sciences Award. 🙂 🔬 Congratulations Adam! 👏🎖️ Read more about Adam's achievements: www.rms.org.uk/resource/dr-...

Great writeup from our collaborators at UCL Advanced Research Computing on our joint work to make building novel 3D brain atlases faster, more reproducible, and accessible to more labs. 🧠 www.ucl.ac.uk/advanced-res...

BrainGlobe Template Builder

Atlas building is complex and time-consuming. To help the BrainGlobe team meet growing demand, we streamlined the first stage: generating a high-quality, standardised 3D reference template.

ucl.ac.uk

Today we're launching the Open Source for Science Fund, a new multi-donor philanthropic fund by Renaissance Philanthropy, seeded by @biohub.org and @wellcometrust.bsky.social, with support from @kavlifoundation.org and @researchsoftware.bsky.social 🧵 os4science.org/news/open-so...

Open Source for Science Fund Launches to Power AI-Driven Discovery

A new multi-donor fund by Renaissance Philanthropy seeded by Biohub and Wellcome opens its first call for proposals.

os4science.org

New preprint: Whole-body 3D kinematics of freely behaving 𝐷𝑟𝑜𝑠𝑜𝑝ℎ𝑖𝑙𝑎 New tech from @blobology.bsky.social & others at @hhmijanelia.bsky.social, which @ispizua.bsky.social and @elliottabe.bsky.social used to gain insight into 3D structure of locomotion & courtship www.biorxiv.org/content/10.6...

Today we're announcing the Virtual Biology Initiative—a major new commitment to build the data foundation biology needs to power the next generation of AI models. Next-gen imaging. Molecular engineering tools. Open data infrastructure for the entire scientific community. Read more: bit.ly/3ONTkHO

Biohub launches the Virtual Biology Initiative

A $500M commitment to galvanize a global, open-data effort to build predictive models of the human cell.

bit.ly

🚨🚨JOB ALERT🚨🚨 I'm hiring a cogsci/philosophy/compneuro postdoc at @ucl.ac.uk @uclbrainscience.bsky.social @uclpals.bsky.social! www.jobs.ac.uk/job/DRH486/p... Come to London & work on frameworks for "testing" for consciousness using Bayesian belief updating & latent variable modeling. Pls share!

Postdoctoral Research Fellow at UCL

Discover Postdoctoral Research Fellow jobs and more in higher education on jobs.ac.uk. Apply for further details on the top job board.

jobs.ac.uk

We are looking for two Research Assistants to conduct experiments and data analyses investigating the neural mechanisms of strategic and social decision-making using head-fixed (1) and freely-moving (1) behavioural paradigms in mice. www.ucl.ac.uk/work-at-ucl/...

UCL – University College London

UCL is consistently ranked as one of the top ten universities in the world (QS World University Rankings 2010-2022) and is No.2 in the UK for research power (Research Excellence Framework 2021).

ucl.ac.uk

After three years of working on this review with my collaborator Emily Dennis (Janelia Farm), it is finally in press. The review provides an overview and our personal reflections on what constitutes an integrative approach to neurobiology of foraging. Enjoy www.annualreviews.org/content/jour...

Neurobiology of Foraging: An Integrative Approach

Foraging, defined as the search for food to sustain one's energetic needs, is a fundamental behavior performed by almost all animals to survive in their environment. Foraging involves a variety o...

annualreviews.org

Drawing regions of interest has been among our most-requested features, and a long time in the making. Building it on top of @napari.org was fun. Drawing and editing shapes is such a joy!

SWC/GCNU Neuroinformatics Unit@neuroinformatics.dev · 3mo ago

Movement v0.16.0 released! This version now comes with the ability to draw, save, and load Regions of Interest in the GUI, and load_dataset can now automatically detect the source software. See the release notes for more info and a full list of changes: github.com/neuroinforma...

Our first project is live. ✨ With support from @biohub.org, @image.coop is coordinating work across the #OMEZarr community to help move the standard toward 1.0—supporting both implementation and the coordination needed to get there. More details in our latest post: image.coop/blog/posts/2...

The team of JupyterCon 2023, PyData Paris 2024 & 2025 organizes a new conference named Compute! Paris 2026 on open source computation and data. The event will take place on November 25–26, 2026 at Sorbonne Université in Paris. CfP deadline: May 24, 2026: compute.events/paris2026/cf...

Call for Proposals — Compute! Paris 2026

Submit your talk proposal for Compute! Paris 2026. The Call for Proposals is open from April 15th to May 24th, 2026.

compute.events

Mapping brains never gets old, especially when the territory is new 🐦🧠🗺️. Loved being drawn into this collaboration by @neuroweiler.bsky.social and learning about birds and their magnetic senses. Stay tuned for more new atlases coming to @brainglobe.info

Sainsbury Wellcome Centre@sainsburywellcome.bsky.social · 4mo ago

A migratory bird brain, the Eurasian blackcap, has been mapped for the first time using high-resolution light microscopy. The open-source software tools developed form a foundation for new brain atlases to be built for any species, providing a valuable resource.