Vincent Pasque

@pasquelab.bsky.social

Stem cell and developmental biologist, Professor @ University of Leuven, Belgium. #Pluripotency #Epigenetics

We are thrilled to share our new pre-print: “System-wide extraction of cis-regulatory rules from sequence-to-function models in human neural development”. S2F-deeplearning models can accurately encode enhancers, yet decoding these models into human-interpretable rules remains a major challenge.

We have just published a tribute to John Gurdon, reflecting on his scientific legacy and the profound influence he had on generations of developmental biologists. The piece is available open access in Nature Communications: www.nature.com/articles/s41...

Reversibility, regulation, and the community of development: the legacy of Sir John B. Gurdon - Nature Communications

Nature Communications - Reversibility, regulation, and the community of development: the legacy of Sir John B. Gurdon

nature.com

𝐍𝐞𝐰 𝐩𝐫𝐞𝐩𝐫𝐢𝐧𝐭 𝐚𝐥𝐞𝐫𝐭! 🎉 “𝐗𝐈𝐒𝐓 𝐃𝐫𝐢𝐯𝐞𝐬 𝐗-𝐂𝐡𝐫𝐨𝐦𝐨𝐬𝐨𝐦𝐞 𝐈𝐧𝐚𝐜𝐭𝐢𝐯𝐚𝐭𝐢𝐨𝐧 𝐚𝐧𝐝 𝐒𝐚𝐟𝐞𝐠𝐮𝐚𝐫𝐝𝐬 𝐅𝐞𝐦𝐚𝐥𝐞 𝐄𝐱𝐭𝐫𝐚𝐞𝐦𝐛𝐫𝐲𝐨𝐧𝐢𝐜 𝐂𝐞𝐥𝐥𝐬 𝐢𝐧 𝐇𝐮𝐦𝐚𝐧𝐬” 𝐢𝐬 𝐧𝐨𝐰 𝐨𝐧 𝐛𝐢𝐨𝐑𝐱𝐢𝐯! www.biorxiv.org/content/10.1...

XIST Drives X-Chromosome Inactivation and Safeguards Female Extraembryonic Cells in Humans

Dosage compensation of sex chromosomes through X-chromosome inactivation (XCI) is required for mice extra-embryonic tissue growth and embryo development. The species specificity in mechanisms and timi...

biorxiv.org

Adios and salut to a pioneer! Sir John Gurdon studied the requirements and barriers of #reprogramming. Highly relevant for us, with his PhD student Vincent Pasque he showed that macroH2A is part of the epigenetic barrier inhibiting reprogramming. Our thoughts are with his family and friends.

Manuel Collado@manuel-collado.bsky.social · 10mo ago

Sad to hear about the passing of John Gurdon, a titan and pioneer of developmental biology and much more. Winner of the Nobel Prize in Medicine or Physiology, shared with Shinya Yamanaka, who actually was inspired by his work www.cam.ac.uk/research/new...

It is with profound sadness that I have learned of the passing of my beloved PhD supervisor, John Gurdon. We have lost a true giant, an incredible mentor, kind and generous, whose contributions to science will inspire generations. He changed my life, and the lives of so many others.

Bild

I spoke with Benjamin Thompson on the Nature Podcast about a new study that uses stem cell-based embryo models – blastoids – to uncover how a recently evolved cis-regulatory element became essential for early human embryo gene regulatory programs. Tune in a share your thoughts below.

Nature Podcast@naturepodcast.bsky.social · 10mo ago

This week on the pod: 🦠 How ancient viruses drive modern human development 🧬 How heat can fuel DNA computers go.nature.com/42QSI7W

Today in @nature.com, we present our work leveraging functional genomics and human blastoids to uncover a human-specific mechanism in preimplantation development driven by the endogenous retrovirus HERVK. Special thanks to the reviewers whose comments improved our manuscript a lot! rdcu.be/eI3tD

A human-specific regulatory mechanism revealed in a pre-implantation model

Nature - Genetic manipulation of blastoids reveals the role of recently emerged transposable elements and genes in human development.

rdcu.be

📣 It is my pleasure to announce our recent review with Margherita on the current approaches, challenges, and perspectives in studying human maternal-fetal interface using in vitro models www.cell.com/cell-stem-ce... 🚀✨️

Modeling the human maternal-fetal interface

This review explores the advances in stem cell and organoid models of the endometrium, placenta, and embryo, outlining challenges in integrating them to capture spatiotemporal dynamics and functional ...

cell.com

FMI science@fmiscience.bsky.social · 11mo ago

In a Review just published in @cp-cellstemcell.bsky.social, @vladbndk.bsky.social and Margherita Turco explore how stem cell and organoid models can be used and combined to better study the maternal–fetal interface. A 🧵