Sally Lowell

@cellysally.bsky.social

Developmental & stem cell biologist, University of Edinburgh Digs repetition Also digs local coordination between cells in development and disease #SustainableConferencing #Music #Science #MoreScience Mastodon @CellySally@biologists.social

Join us as Sustainability Officer to develop & share best practice for sustainable conferencing, manage & organise sustainability data collection, analysis and reporting, and lead the Company’s review of SGDs. Closing date for applications: 7 September. www.biologists.com/about-us/wor...

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biologists.com

Do you work with microscopy images and segment to quantify or track? Do you study cell biology? development? Gather round! Let me tell you about FOCUS-3D, a segmentation algorithm that is fast, accurate and can be used on any model. We used it here to study zebrafish development. 🧪 (thread)

FOCUS‑3D: Robust, generalizable volumetric cell segmentation for three‑dimensional fluorescence microscopy

Understanding how cells establish spatial organization within tissues is a fundamental question in life sciences. While modern three-dimensional fluorescence microscopy captures large-volume tissue ar...

biorxiv.org

So happy & excited to see our paper out in @plosbiology.org ! 🎉 With contributions from many past & present members of the Lowell & Wilson labs @edinuni-irr.bsky.social , and a fantastic collaboration with @osvaldo-chara.bsky.social & @alberto-ceccarelli.bsky.social. 🧵👇(1/10)

PLOS Biology@plosbiology.org · 2mo ago

Neuromesodermal progenitor cells generate multiple tissues. This study by @abinagui.bsky.social @edinuni-irr.bsky.social @osvaldo-chara.bsky.social @cellysally.bsky.social &co maps their functional heterogeneity and links TF expression thresholds to #cellFate. 🧪 #AcademicSky plos.io/4xWA8Ze

3D spatial organization of neural and mesodermal lineages in the developing embryo.

A 3D image projection of a day 7 mouse embryo, stained for neural SOX2 (magenta), mesodermal TBXT (green) and DAPI (blue) revealing the precise spatial organization of neural and mesodermal transcription factors that govern body axis elongation.
Credit: Filip J. Wymeersch
License Agreement: The copyright holder agrees to publish this image under the Creative Commons Attribution 4.0 International License (CC-BY 4.0).
Note: This image was acquired by confocal microscopy. No generative AI was used in data acquisition or processing.

We have written a statement in support of Ghent Uni's decision to suspend Nathan Cofnas. We resist attempts to frame this as a punishment for "whistleblowing" or censorship of "controversial research". We invite all academics who share our views to sign our letter. forms.gle/qwN8xzEM5C7Q...

Open letter on the suspension of Nathan Cofnas at Ghent University

We, colleagues of Nathan Cofnas - supported by many colleagues internationally - want to respond to the negative and incorrect framing of Ghent University’s decision to suspend Nathan Cofnas. With th...

forms.gle

It was alleged that Jason Arday was an academic fraud mainly based on accusation of plagiarism initially moved by Nathan Cofnas. I have compared Arday's thesis with the one he's been accused of copying and found a bare 4.2% similarity.

Bild

Beautiful piece on how field-specific journals with high ethical standards, such as Development, don’t try to « Game » the impact factor system - and practical steps to move away from this inherently flawed metric as a researcher (see Box 2)

James Briscoe@jamesbriscoe.bsky.social · 5mo ago

As Editor of @dev-journal.bsky.social I get asked "What are you doing about your impact factor?" In our new editorial we say: Ask not what Dev can do for the impact factor. Ask what you can do for Dev's IF The IF is about how we all cite, review & assess each other's work doi.org/10.1242/dev....

Yet another important benefit of having not-for-profit publishers within the scientific publisher ecosystem. They can do interesting (sometimes risky) experiments, testing innovations that aim to benefit the scientific community rather than enriching shareholders. Up with this sort of thing!

Daniel Gorelick@danielgorelick.bsky.social · 5mo ago

Paying peer reviewers works. Expanded Fast & Fair experiment @biologyopen.bsky.social: • 5.5 vs 37.7 working days to decision with reviews • ~3 vs ~9 reviewer invitations per manuscript • no reduction in editor-assessed review quality • similar acceptance rates www.biorxiv.org/content/10.6...

Scatter plot showing that Fast & Fair peer review reached first decision with reviews much faster than conventional peer review: mean 5.5 versus 37.7 working days. Most Fast & Fair manuscripts met the 7-working-day target, while conventional manuscripts were slower and more variable, up to 116 working days.

SO INTERESTING! #PaperThemeTune: Careful With That Axolotl Eugene, by Pink Floyd www.youtube.com/watch?v=7RnF...

Pink Floyd - Careful With That Axe, Eugene (Live at Brighton Dome)

YouTube video by Pink Floyd

youtube.com

Wouter Masselink@woutermasselink.bsky.social · 5mo ago

🚨 New preprint 🚨 Massive shoutout to first author @abinagui.bsky.social !!! The common view is that regenerative competence declines with age. We challenge this idea by showing that axolotl tail regenerative competence is emerges during a defined embryonic window. www.biorxiv.org/content/10.6...

This is a wonderful opportunity, open to postdocs too! Together with @rocha-lab.bsky.social we’ll be organising one on “Bridging Scales and Disciplines to Understand Robust Development” next year. More info soon - registration will open in July!

The Company of Biologists@biologists.bsky.social · 5mo ago

Last few days left to submit your idea for a Workshop for our 2028 programme. Send us your proposal by 29 May 2026 at www.biologists.com/workshops/pr... #BiologistsWorkshops

Graphic showing people attending Workshops with headline 'Want to organise one of our Workshops? You focus on the science, we focus on the logistics'

Had so much fun at @bsdb.bsky.social a few weeks go and am very excited about all the upcoming stories I saw. Check out the #preprint list I've collated from the meeting, now on @prelights.bsky.social👇 prelights.biologists.com/prelists/bsd... And please do let me know if there are any I missed 👀

BSDB Spring Meeting: Molecules to Morphogenesis - preLights

prelights.biologists.com

preLights@prelights.bsky.social · 7mo ago

From molecules to morphogenesis Discover a curated #preList of preprints presented at the BSDB Spring Meeting @bsdb.bsky.social - highlighting exciting new research in developmental biology Explore this #preprints list prepared by @ingridtsang.bsky.social ⬇️ prelights.biologists.com/prelists/bsd...